Restauro-G

Document

Target databases

Protein database UniProt/Swiss-Prot
UniProt/TrEMBL
NBCI nr
Domain HMMPfam
Orthologs NCBI COGs
Protein Location Psortdb

 

Annotations by Restauro-G

/rs_des Description of Restauro-G predicted protein obtained from UniProt KB
/rs_com Comments of Restauro-G predicted protein obtained from UniProt KB
/rs_ft Feature tables of Restauro-G predicted protein obtained from UniProt KB
/rs_xr Cross referrence of Restauro-G predicted protein obtained from UniProt KB
   
/rs_cogs COG family of Restauro-G predicted protein obtained from NCBI COGs
/rs_psortdb Information of Restauro-G predicted protein position obtained from Psortdb
/rs_pfam Results of Pfam searches
/rs_protein_1~5 Name of the annotated protein and its level in orders of confidence

 

Options for Restauro-G

-help , -h

Shows help.

-man

Shows documents of Restauro-G.

-version , -v

Shows version of Restauro-G.

-format = type (default: genbank)

genbank - GenBank format
   embl - EMBL format
    gff - GFF format 
Sets the output format of the annotated genome.

-output = type (default: <"input file">.res')

Sets the output file name of the annotated genome.

-target = N (default: 2)

Set the target database of Restauro-G searches. 
1 Swiss-Prot
2 Swiss-Prot TrEMBL 
3 Swiss-Prot TrEMBL NCBI nr
4 Swiss-Prot TrEMBL NCBI nr NCBI COGs
5 Swiss-Prot TrEMBL NCBI nr NCBI COGs PSORTdb HMMPFAM

-minScore = N (default:100)

Sets the minScore of the BLAT search used in the similarity search. 

(C) 2006 Institute for Advanced Biosciences, Keio University